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The error below seems to be arising from some software version incompatibility ? but it is not clear what. bowtie log is not empty, and bowtie version is 1.3.1
The digital haplotype is written into…
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This is a meta issue to track remaining and future work for the new tools for annotation-based filtering, which will hopefully replace VQSR. Internal developers may want to see further discussion at h…
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Hi!
I noticed that in our case 23289, the 3'UTR polymorphism c.*442_445delTAAA is visible in Scout, but not shown on the front page, although we have the variant saved as a managed variant. This is q…
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Hello from Lund!
We are in process of an RNA-seq validation using Tomte, and as part of that I have been loading Tomte outputs into Scout.
At the moment, this requires several steps of post-proc…
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### Description of feature
IMO autoencoder-based sequence embedding has a huge potential for finding similar immune receptors, potentially improving both the speed and the accuracy compared to alig…
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There was a discussion in Slack that a general API that could handle management of materialized views related to the genotype_call table would be useful.
In the discussion I suggested that an API t…
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As part of the BioHackathon 2016, the J-phenome group is looking towards getting their data integrated into Monarch. This is apparently from a previous conversation with Hiroshi
Masuya, who Melissa me…
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Nina really wants clonality information to be used in our pipeline!
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Your paper "Mechanisms of transcriptional regulation in Anopheles gambiae revealed by allele-specific expression" has now been published online and is available to read and download at
https://royals…
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Hi,
I'm trying to run the CHT pipeline. When I run the bam2h5.py script, I have the following message: "WARNING skipping read: handling of partially mapped reads not implemented". After looking at t…