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When adding multiple bam files with the same name, they overwrite each other while doing the sorting. (braker.pl line 5501)
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Hello! Thanks for providing this awesome tool!
I'm presently working on samples done on different technologies, i.e. Illumina based or Nanopore based. The samples processed with Illumina and standar…
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Is it possible to access the original BAM and BED files that were used to create the .cnn files?
Thanks,
Jacob
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Hi, thanks for developing TALON for long-read RNA-seq analysis.
I was working on the ONT direct RNA-sequencing data. Following the tutorial, I ran talon but there was an ERROR about sam files.
He…
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I was wondering when you run MACS2 with BAMPE option, does it matter how to sort BAM files?
or is it best to run with unsorted bams? I saw that people reported unmatched results with coordinate and na…
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Hi,
I was trying to process a bam file coming from a scATAC sequencing, but after waiting for hours the process seems to be stuck at the beginning (see image attached). The input bam file is 33 Gb …
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### Description of the bug
I'm getting an error from mosdepth in the process NFCORE_RAREDISEASE:RAREDISEASE:QC_BAM:MOSDEPTH on the dev branch.
### Command used and terminal output
```
[fa2k@nepe 06…
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Hi, @hasindu2008
When I use f5c to eventalign RNA004 data, the system popped up this bug and crashed.
Here are a few screenshots.
Here is my code:
`for i in input; do`
`echo $i`
`mkdir -p…
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Hi, I am locating the mapping file. Just curious about why there is no `.bam.bai` file in the `work-file`?
Thanks.