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Hi,
I used RunDEtest before and it worked just fine. Now that I'm using the latest SCP version (SCP 0.5.4) because of the velocity genes error, this doesn't work anymore (not running, still 0% afte…
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How do you specify the `BPPARAM` argument to make `mmDS` to run parallel? The default is set as `BPPARAM = SerialParam(progressbar = verbose)` which means it going to run serial right? And when I run …
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Hello,
I am currently working with a reasonably large dataset of EPIC v1 and v2 arrays (> 100 samples) with my institution's compute cluster, which is slurm-based. The issue that I am running i…
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Warning in RunGSEA(srt = scData.OST.l[[i]], group_by = paste0("Standardpca_SNN_res.", :
All values in the geneScore are greater than zero. Set scoreType = 'pos'.
Species: Homo_sapiens
Loading ca…
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Using `BiocParallel`. New signature should be
``` r
setMethod("mapToGenome", c("Proteins", "GRangesList"),
function(x, genome, drop.empty.ranges = TRUE, ..., BPPARM))
```
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sets
ghost updated
3 years ago
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Hi, for some reason, I can't get readChromatogram to return XICs. I've found a similar issue [here](https://github.com/fgcz/rawrr/issues/47), but the cause of the error there doesn't apply to me. Here…
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As the samples get processed one by one, it might be of interest to try and parallelize that so that runtimes might be significantly shortened, especially when running many samples at once
`BiocPar…
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Hi !
In the GSVA() function, we can use the parallel.sz argument to parallelize the task on multiple cores. This works really well but it limits you to the number of core available on your computer…
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I was debugging my function with the following:
```{r}
variants = 5 jobs