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Hi,
Thanks a lot for your useful script.
I would like to use kraken-biom in order to process [krakenhll ](https://github.com/fbreitwieser/krakenhll) output (krakenhll adds some additional functional…
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The following points need attention:
-[ ] "If needed, update metadata in .biom table obtained in xxxxxxxx" Please change xxxxxxx for whatever goes there.
- [x] Provide link to UNITE
- [ ] Add e…
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Hi,
Phinch is great. Fantastic way of getting people to take ownership of their data.
However over the last week I have had issues getting new files to open. I can get previously uploaded json …
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IUC has quite some tools using datatypes that are not known to Galaxy:
```
for i in $(grep 'format="' . --include "*xml" -r | sed "s/'/\"/g" | sed 's/.*format="\([^"]*\)".*/\1/' | sed 's/,/\n/g' |…
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Via @ElDeveloper, see http://scikit-bio.org/docs/latest/generated/skbio.io.format.lsmat.html#module-skbio.io.format.lsmat for "labeled square matrix" format for QIIME. It looks to me like #217 / `sour…
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Dear All,
I want to try your amayzing phyloseq package on a biom table generated by MEGAN. The format of my biom table is : "Biological Observation Matrix 1.0.0" and the type is "Taxon table".
I did s…
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These are currently required to be passed in as txt files.
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There are several recent developments but also legacy situations that may require us to look beyond Darwin Core Archives and think about implementing connectors for other data formats. We are well awa…
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I've used qiime to generate an OTU table for my datasets. Is it possible to viz with Krona
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Hi,
Thanks for this pipeline! I am running it and having trouble with the predict_metagenomes.py step. When I the normal predict_traits.py command you recommend and then add the KEGG I get the fo…