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Hi, when I tried to run with careful or unicycler model the error occurred as follows"Execution cancelled -- Finishing pending tasks before exit
-[nf-core/rad] Pipeline completed with errors-
ERROR …
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As per the 4th Pydna meeting, it was generally agreed that Pydna and tools that depend on it would benefit from being able to simulate modern commercial Tm calculators offline.
I have compiled dat…
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In rare cases, the fasta headers in the annotated output can lack one of the fields due to a seriously bizarre bug in BioPython's SeqIO.write() function.
This occurs if the sequence's length happen…
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Hi Peterjc,
I tried to install your venn_list tool from the toolshed of my Galaxy instance (v15.07) and it seems to have some troubles installing the dependency biopython / package_biopython.
If I l…
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Hi DeepFRI!
Do you have idea how to troubleshoot this `BiopythonParserWarning: 'HEADER' line not found` error as follows?
```
(DeepFRI) johnnytam100@DESKTOP-BDBH5VJ:/mnt/e/test/test_DeepFRI/Deep…
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I haven't found any issues here about that, but it seems a very obvious thing: Biopython needs to have a parser for files with genomic data, like WIG or BED. As far as I know, there is know such thing…
Phlya updated
7 years ago
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conda is leveraged for installing (some) dependencies (at least, the recommended install method), but conda is not fully leveraged via a bioconda recipe for installing scNanoGPS.
Are there plans on…
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The alignment commandline wrappers via Biopython are deprecated and will be removed in a future version.
This means that the use of the clustalw wrapper in `align.py` will no longer work once this …
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Hi,
I have an issue to run your pipeline. I tried HmmGen and TermGen and got very similar errors ?
Running the HmmGen script...
HmmGen error code: 1
HmmGen 2.25 (September 27, 2021)
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@peterjc @erasche (because your are both heavily involved in genome annotation).
We are running a genome annotation workshop in the end of this month here and I would like to include our biopython to…