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Hello there
Thanks a lot already for the work on this package!
I am trying to cluster 34,937,058 sequences of about 1000bp (18S amplicons) contained in a single fasta file, I'm using the following…
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When similar motifs are obtained with `peak-motifs` we might want to use `matrix-clustering` to merge them and obtain a consensus representative. We might want to check **Setp 6** in https://www.biorx…
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Hi,
I have a matrix(mat) of gene expression data with patients(417 patients) as columns and genes (180 genes) as rows. I want to classify the patients(not the gene expression pattern) based on their …
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Hi there,
I haven't been able to complete a successful run. It seems to have an issue creating a conda environment (conda otherwise seems to be working perfectly).
Output as follows:
`
Nan…
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I have installed the latest version of OPERA-MS (installed today, Feb 22, 2021) on an Ubuntu 16.04.6 cluster. Using an interactive session to run the test files with the following commands (I did not …
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Hi there!
I am trying to use NGSpeciesID with some custom parameters but I am not sure if maybe I am doing something wrong... here my command:
`NGSpeciesID --consensus --t 24 --fastq fastq_pass.fa…
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After the clustering stage, the output given was "20623 gene clusters found". After taking the clusters.out file and moving through the correction stage, 8074 clusters were left in the consensi.fq fil…
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Hello,
I'm trying to run NanoCLUST with my 16S sequence data. I run it on a Linux CentOS 7 machine.
Also with the test data I get an error reaching the 'consensus_classification' module:
When I u…
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Hello Barath, I'm facing build error issue.
I'm using windows10, OpenCV 3.4.1, wingwX86_64-7.3.0,eigen3.4.0,gflags
![4IODY3O U`XHM}QH@$@LP6L_tmb](https://github.com/danini/clustering-in-consensus-…
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Hi guys,
When i running the cnmf, the error showing up lying below:
ValueError: Distance matrix 'X' must be symmetric.
miniconda environment
python 3.7.13
Best