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Certain pycytominer functions run into scaling issues for extremely large datasets. This can be solved by enabling an optional install of [modin](https://github.com/modin-project/modin) which is a dro…
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A common issue that keeps surfacing involves how missing values are handled in CellProfiler, and, subsequently, in downstream image-based profiling pipelines.
There appear to be many somewhat indep…
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This issue shows that problems of partial loading configuration into scripts. Partial loading requires more variables to be created to separately load configuration into these script
```yaml
# agg…
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In #129, @niranjchandrasekaran proposed that pycytominer create a metadata column, called `Metadata_fields_count`, that will be added to all future pycytominer-derived aggregate profiles. This represe…
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Trying to create today, I got the following stack trace. Since other conda-forge stuff is not listed as missing, I'm guessing it's that those versions of conda and pip are no longer supported. Will ma…
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Let's use this to discuss how we can link images to metadata
@dmikeando Presumably all that you are using as input right now is the images, but no other information about them.
To help you get…
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**Describe the bug**
Thanks for the great work on Parsl - it's an awesome tool! I noticed when attempting to load a HighThroughputExecutor configuration after using `parsl.clear()` an exception occ…
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In #198 @d33bs states:
> Setting a goal post of when SQLite will be unsupported might help make some of the judgements surrounding what to do presently [specifically for handling memory leak #195]
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Having the metadata broken out into platemaps and external is still a relatively new thing, and the image analysis team to date has typically only ever dealt with the platemap level metadata. Thus, on…
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When reading the source code for `cytominer_eval.operations.precision_recall()` I noticed that the similarity_melted_df variable counts each replicate pair twice, e.g. A1 --> A2 and A2 --> A1.
This …
FloHu updated
2 years ago