-
Could you please provide the following information:
1. example syntax for DNA_FT.py
2. example input and output file pair
3. list of dependencies for installation (preferably using downloads all …
-
I need this before simplifying ?`create_razzo_paramses_file`.
Start has been made:
```r
test_that("matches article", {
pir_params
-
Currently only dispr is included for filtering and orientation. However HMMs would make sense as well. Especially, as we have good HMMs for the borders of the ITS2.
iimog updated
5 years ago
-
Dear Authors, dear Sina and Adrian,
Sorry to contact you once more in this short timeframe.
After the previous issue was fixed, I re-installed read2tree and successfully ran the test dataset.
The…
-
The Smith-Waterman algorithm is essentially a paiwise sequence alignment algorithm typically used in bioinformatics to optimally align two (e.g. DNA) sequences.
The Smith-Waterman algorithm can be s…
-
**Issue: Long Running Time and High Memory Consumption for `paffy` in `cactus-blast`**
Hello,
I am aligning wheat genomes using the `cactus-blast` workflow, and I have encountered significant is…
-
Nice work!
Would it be possible to get R bindings for this? I put together a minimal example here: https://github.com/traversc/WavefrontAlignR (feel free to do whatever with it)
I'd also like t…
-
I have many similar sequences of different lengths and need to get the consensus of them.
From the docs, the seq module should work for this, but any example provided?
-
I'm trying to use "embarrassing" parallel constructs to create a similarity matrix between two different sets of fasta files. Following is the code:
```
# -*- coding: utf-8 -*-
import sys
import …
-
I have identified an important frameshift variant in TP53 using whole genome DNA sequencing and Strelka2 variant calling and Bowtie2 mapping. I wanted to see if it was identified in matched RNA sequen…