-
Discussion and use case
https://help.galaxyproject.org/t/no-link-for-ucsc-to-visualise-datasets/12260/
From UCSC. This would either be in addition to the ucsc.builds.txt
You will also need all ge…
-
-
## Describe the issue
I have discovered a new problem. The CDS coordinates for some genes are incorrect. For example, the mutation SRGAP2:NM_015326.5, c.85A>T(p.T29S) has been annotated as c.994A>T(p…
-
HOME [tab] > Explore genomic data through the Viewer [heading] > View genome [button] > Variants [channel] > [cog button] > [channel configuration] > ADD FILTER [button] > [dialog]
We should provide …
-
### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
- Glycine/max/genomes/Wm82.gnm6.S97D
- Glycine/max/annotations/Wm82.gnm6.ann1.PKSW
- [X] Add …
-
So far it seems this repo is being used for the sequence viewer. Should the repo be named `t5-seq-viewer` or something more specific and meaningful? Or is the intention that `t5-commons` will develop …
-
### Command description
It's a command line tool for working with JBrowse 2, which is a genome browser that can display information about DNA and stuff.
### Command details
Latest version is 2.10.1…
-
### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
- Phaseolus/coccineus/genomes/PHA8298.gnm1.PYJ1
- Phaseolus/coccineus/annotations/PHA8298.gnm1.…
-
### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Arachis/stenosperma/annotations/V10309.gnm1…
-
There is not much space, given that the "Ref. Seq." and "Genes" channels are fixed, and attempts to scroll to see the other channels (e.g. Variants, Variants: Fst - Global, Variants: Fst - WAF...) som…