-
Using GSAlign with several genomes against the same reference I've found that some SNPs (same contig, same position) have different reference sequence.
Example:
GCA_002119955.1_KP024.fna.output.…
-
**Käsitteen tyyppi**
CONCEPT
**Ehdotettu termi suomeksi**
genominmuokkaus
**Ehdotettu termi ruotsiksi**
**Ehdotettu termi englanniksi**
**Tarkoitusta täsmentävä selite**
Genominmuokkaus on…
-
Hello folks,
I believe I am almost there attempting to run ipdSummary smoothly.
Could you please check the attached log file out and give me some support to solve that.
Thanks a lot in advance,
Best,…
-
Hi,
I am currently applying what I learned from RNA-seq by example to my own dataset and have run into what seems to be a common issue when passing an NCBI annotation file (GFF format) to featureCo…
-
In essence, this will provide an index of tools useful for making potential manuscript figures, with image examples. It could be divided like this:
**- Genome visualization**
- includes tools u…
-
Hi
Could you please add more information on how to install this tool using docker? e. g.
1) In step 3; Does docker include all dependencies such as Braker, interproscan, etc.? or they should be ins…
-
Hi team,
I want to compare m6a levels between my samples among other analyses. I first ran m6anet to get sample level m6a output and didn't have the foresight and space to keep `f5c` `eventalign` f…
-
Hi Gotoh,
Recently, I'm trying to replace genewise with your spaln. I found spaln could get more expected gene structure as query protein. It seems great! To apply in non-model and non-reference ge…
-
Hi, Qing,
I'm using GIREMI to find some RNAE in my RNA-seq data. I have good aligned file src.bam, reads are paired end (and properly paired). I'm performing following steps:
1. Sorting bam in c…
-
Hello,
There are several files missing from the distro for LongAmp such as longamp_delly_calling.sh and longampfigures_distribution.py.
Is there a reason these were left out?
Also is there some …