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The following models in the sbml3 model collection have reactions without any reactants or products.
The best
Matthias
[12:05:23,062 INFO CobraPyCollectionTest:145] - CobraPyTest: /models/m_model_co…
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>> sedUnix('CDT1.faa');
>> modelaceto = importModel('RehMBEL1391_sbml_L3V1.xml');
WARNING: The following metabolites are never used in a reaction:
fol_c
WARNING: The following genes are not a…
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### Background
Technological advancements in the determination of complete genomic sequences and their annotation, and the well-explored biochemistry of metabolic transformations have facilitated the…
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This is a followup to #1872, but I am writing it here to start a separate discussion on this.
Background: now anvi'o has a way to help people define their own metabolic modules, the question is how…
meren updated
2 years ago
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I will collect the ToDos from this thread here @GwennyGit maybe you can mark what you did already and on what branch :D
- [x] remove CGXII and replace by CGXlab but rename to CGXII
- [x] remove LB an…
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## Keyword: metric learning
### Sparse online relative similarity learning
- **Authors:** Dezhong Yao, Peilin Zhao, Chen Yu, Hai Jin, Bin Li
- **Subjects:** Machine Learning (cs.LG); Artificial Inte…
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Hi Daniel,
I am trying to carve around 3000 genomes I obtained from a complete metagenomics dataset.
I was able to carve most of them, but the last ~150 are giving me a hard time.
Below is the ou…
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Hey! It's nice to see this repository alive! 🤩
And here I am with an issue! 😁
I am trying to create a first draft reconstruction of _A. thaliana_ metabolism with this code:
```
outputStruc…
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The intro paragraph in section 1 has missing references
Genome Scale Metabolic Reconstructions (GSR’s; ?)
Level 2 or Level 3 core specification (??)
(This in https://github.com/sbmlteam/sbml-…
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