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Hi team, great looking tool that I'm excited to try.
The bulk of my work at the moment is on Nvidia Jetson boards running arm64 CPUs. I just tried running minotour (both docker and building) and am…
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Hello Shenwei,
Thank you for making this new metagenomic tool! I'm interested in benchmarking its performance, and for that I want to perform classification on a large (10,000+) number of samples. Th…
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I keep seeing the presence of an unknown taxa with the name "V1" anytime I construct my taxa bar plots. However there is nothing in my taxanomy.tsv file that traces back to this "V1" taxa and it seems…
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Hello,
Thank you for developing BERTax! It looks like a really great tool for taxonomic classification of sequences that are typically difficult to classify with tools that rely on big databases.
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> Taxonomic assignment is the core of targeted metagenomics approaches that aims to assign sequencing reads to their corresponding taxonomy. Sequence similarity searching and machine learning (ML) are…
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Hi. Dear developer. Thank you for making this awesome tool!
I use Genomad to annotate metagenomic assemble (i.e., contigs) using the end-to-end pipeline. When the message "geNomad marker-classificati…
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Hi, and many thanks for the excellent annotation tool. I have a query regarding viral AMG annotation. I have a bunch of viral contigs identified through metagenomics. The contigs were cleaned using C…
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Hi!
I encountered an issue when running VirSorter2 without circular sequences as input, as I only retrieved linear seqs from my contigs. I was running VirSorter2 on a metagenomic co-assembly (with …