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Hi,
Thank you for the excellent tool! I'm trying to use it based on the biorxiv paper but I have some questions:
1. for the bwa index, I noticed that in the paper you mentioned you used the non-…
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In microbiome time series analyses we have the definitions of abundant taxa, conditionally rare taxa, persistently rare taxa and other rare taxa (see e.g. the two refs below).
Conditionally rare …
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hello
thank you for your perfect data collection.
I want to use your data for a machine-learning algorithm.
is it possible for you to help me understand the dataset structure?
which file is compl…
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Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns – Casper Sahl Poulsen – Microbiology Spectrum
https://journals.asm.org/doi/…
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as suggested by James M. @jmacklin -
"This challenge could add another whole layer of data and parasite interactions! https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1008028…
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There was a concern on the [qiime forums](https://groups.google.com/forum/#!topic/qiime-forum/-Q-BAhkVXY0) that `compute_core_microbiome.py` fails when there is no observation metadata (i.e. taxonomy)…
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The `install.sh` errors for me. Seems to be due to the treeshrink package from smirarab channel.
I guess the important bit is `HTTPError: 404 Client Error: Not Found for url: https://conda.anaconda…
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Hello, I have been working with the TOPOSCORE tool and have successfully executed the associated code. However, I have encountered a query regarding the 'met4' object. I have utilized the following co…
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We like to try and keep things spicy and interesting here at Coveros. So if you'd be interested in hearing a joke about your favorite number [7], just reply with 'Yes' and I'll tell you one. If you do…
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I searched for issues related to the function 'ggtree::msaplot' and found this website:
https://www.r-bloggers.com/2016/08/ggtree-for-microbiome-data/
I am unable to get this line working:
msaplo…