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Hi
I need your personal point of view please
I have two `bulk RNA-seq` patients (PBMC) on which I run `mixcr`
For the same two patients I have `5' single cell` on which I run `TRUST4`
I a…
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Hello,
I currently only have V gene-level information and the first few rows of my "parsed_seqs_file" looks like this table below. My error comes from the "all_genes.py" script not able to find th…
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## 🚀 Feature
Allow plotting of "clonal trees" for bcell data, rooted on the germline.
## Motivation
B-cell repertoires are interesting because of SHM - you can group together different clonot…
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Hello and thank you for your great work!
I input my MIXCR files keeping the non-productive sequences using the command below:
`int_load
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hello,
I just ran some RNASeq data with ImRep. Compared with TRUST and mixcr. Thanks to your wonderful work, this program runs really fast!
But when I tried to the the compare.repertories.py, I …
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Hi all,
## 🐛 Bug
I was trying to import some data from MiXCR 4.3.1 tsv files and recognized warning messages for some of the samples.
After further checking it seems that in rare cases columns are …
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Hi,
thank you so much for the excellent tool for users. I have a question below:
1. I have a single cell immune reportoire data and preprocessed with MixCR
2. loaded by repLoad function.
3. obje…
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Hi!
I am using `repExplore()` function and it is working ok, except when I try to do `exp_len
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### Discussed in https://github.com/milaboratory/mixcr/discussions/1683
Originally posted by **yuyuleung** June 5, 2024
Hello,
I wanna perform MiXCR analysis on my spatial TCR data, where…
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## Expected Result
Starting an analysis from FASTQ files and a BAM file generated from these FASTQ files should produce the same result.
## Actual Result
A small fraction of reads is displaye…