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### What container were you trying to use, and how were you attempting to use it?
Is anybody know why the tool doesn't work when I give in input the diploid genome?
The diploid genome is generated …
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### Description of the bug
Nanopolish doesn't run due to invalid input to MINIMAP2_POLISH step.
### Command used and terminal output
```consolenextflow run nf-core/bacass --input bso.tsv -pro…
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### Operating System
Other Linux (please specify below)
### Other Linux
rocky linux 8.9
### Workflow Version
v2.0.0-g52e3698
### Workflow Execution
Command line (Cluster)
### Other workflow ex…
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### Description of the bug
Hi, there has been a new primer set version uploaded to https://github.com/artic-network/artic-ncov2019/tree/master/primer_schemes/nCoV-2019/V5.3.2, would it be possible to…
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### Description of the bug
For some reson, canu is not running on ONT data (`GenomeSize` specified, reads provided with `LongFastQ`, `R1`, `R2` and `Fast5` are set to `NA`).
### Command used an…
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conda is leveraged for installing (some) dependencies (at least, the recommended install method), but conda is not fully leveraged via a bioconda recipe for installing scNanoGPS.
Are there plans on…
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Hi.
I am having troubles getting epi2me-labs/wf-isofom to work with my ONT RNA data. In my mot recent attempt, I am using the following command:
```
OUTPUT=./output;
nextflow run epi2me-lab…
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I receive the following error message when when I try to run TEdenovo on my assembly
```
Fatal error: Exit code 1 ()
cat: /home/jeremy/galaxy/tools/Pipeline/REPET/WORK/genome_Blaster_Grouper_Map/…
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Hello!
I have been trying out NanoCLUST for 16S analysis of a few of my data and it has been wonderful so far.
But, a few datasets always abort during read_correction.
Even though I have 47 GB …
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My own analysis of Illumina (`SRR11140750`, bottom track) and nanopore (`SRR11140751`, top track) data from the same swab sample shows your variant analysis doesn't include indels:
![image](https:/…