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I was really excited to read your preprint using the ReFrame software you implemented. I was able to install the libraries and conda environments to run the example datasets described in the readme.
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I reviewed the publication:
https://academic.oup.com/bioinformatics/article/39/11/btad659/7330407
I think that the pipeline used both bam files from RNAseq and DNAseq to call for the long indel. Th…
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Per discussion between @md and me and feedback from @cband:
Currently, the final somatic MAF contains 279 columns. These are not all necessary, and a few could be omitted or collapsed into single c…
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Help: please tell me how to solve this problem, thanks!
$ /path/Anaconda2/bin/deephlapan -P LNIMNKLNI -H HLA-A02:01
Using TensorFlow backend.
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Please specify more to add onto [Documentation.md](https://github.com/naturalis/bio-cipres/blob/master/Documentation.md)
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child of #3
arkal updated
6 years ago
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Hi, I'm working on a project to extract features from PAAD patients from the ICGC database for neoantigen immunogenicity prediction in ML. This project follows the steps taken by the model creators. I…
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I copied test data from example_data folder provided by the neoflow.
the input_vcf_list.txt file looks like:
```
experiment sample file file_type
crc_test sample1 /neoantigen2/inpu…
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Hello
thanks for devolving the neofox alogirhtem. I am trying to build a singularity container and then test the data sets. However, i can't figure out why the test data failed. Can you help to ch…