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So far the phenotypes and the SNPs are rather independent from each other, making it hard to link one to the other. But in principle we already have the information needed to link them, at least in a …
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Should add other information than simply the list of transcripts.
At the moment we collect only the list of transcripts:
{"transcript_annot":{"UTR_5_PRIME":{"CG43427":["FBtr0308857"]},"INTRON":{"CG…
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Hello,
is it possible to use a qualitative phenotype in variant tools (with my own R test) ?
I tried, but received the following error message :
Invalid (non-numeric) coding in phenotype/covari…
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We should have the ability to see the unmatched phenotypes for the profile on the left list, as well as for any column. Basically, if you were interested in comparing a patient against a particular mo…
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The article I came across that utilized MTAG left me feeling very puzzled about whether I used the MTAG is correct.
1. As per my understanding, if I were to employ MTAG to simultaneously input fo…
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We agree with reviewer 1 that normalizing the data could potentially improve the GWAS results. Thus, we plan to explore the implementation of this option and assess its impact on the overall results. …
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The NMCRPC one sounds great too – would be good timing as the paper has just been published. https://www.nature.com/articles/s41598-021-01042-7
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Hello,
You mention in the Building Environment section that a binary phenotype is required.
Does that mean quantitative phenotypes are not supported?
If so, do you have any plans to include the…
sinog updated
3 years ago
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we should have example queries for the improved analyze phenotype page, especially where someone wants to compare a set of phenotypes to a gene (s)
I will add examples to this ticket later
@kshefchek…