-
Hi Boscoh
I am interested to identify surface exposed protein in Lactobacillus by using inmembrane tool.
I have appox 7000 sequences and for this i need locally install TMHMM, SignalP, LipoP. Which…
-
Good morning. The script stopped, it tell me to find less stringent parameters. I wonder if the parameters is about the hhblist command or about other command phmmer. I am working with a multifasta fi…
-
Hello
I using esl-sfetch to extract domain sequences from domtblout file from hmmer search.
I found this code in a blog post-
>hmmsearch --domtblout myhits.dtbl tutorial/fn3.hmm ~/data/uniprot…
-
Currently there is no option to save the .domtbl files generated during alignment stage. Alongside the checkpoint_ali option, would be useful for checking the integrity of the alignment process
-
Hi,
OG_fasta.tar.gz contains tens of thousands of small FASTA files, which is very hard to decompress. In fact I had to skip this simply because it has been hours and only a fraction of the files wer…
meren updated
5 years ago
-
Good evening...I can't find this programme. How can I solve the problem? Thank you!
isPredict begins at Fri May 3 17:39:37 2019
Begin to translate genome into proteome.
/bin/sh: 1: /u/zhiqxie/…
-
liuzy@lifeng-PowerEdge-R730:~/tool/hmmer-3.2.1$ make install
/usr/bin/install -c -d /usr/local/bin
/usr/bin/install -c -d /usr/local/share/man/man1
make -C src install
make[1]: Entering directory …
-
I just installed the prokka and did a test run with my config.fa file. I got the error saying: Can't find required 'parallel' in your $PATH.
What should I do to fix this issue?
Thanks
-
Hi,
I've downloaded `dfamscan.pl` here: `/usr/local/bin/dfamscan.pl`. Then, I tried to pull out the help but I got an error:
`perl /usr/local/bin/dfamscan.pl -help
Can't locate Dfamscan.pm in @…
-
Hello,
I am trying to calculate coverage and contamination for a folder of bins. I am sending commands to a server that runs on Redhat (Linux)
I used the command
checkm lineage_wf -x fa /[path…