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The goal is to find **reliable duplication events** in the **phylogenetic trees** of **symmetric repeats**, once they have been identified with CE-Symm. The automatic detection of evolutionary events …
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Software Bazaar: NAME OF SOFTWARE
**Authors:** Michael J. Landis, Jeremy M. Brown, Lyndon M. Coghill, William A. Freyman, Tracy A. Heath, Walker C. Pett, April M. Wright, Sebastian Hoehna
**Sour…
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Hi,
I am a [molecular phylogeneticist](https://en.wikipedia.org/wiki/Phylogenetics), and as such I work a lot with [tree-like objects](https://en.wikipedia.org/wiki/Phylogenetic_tree) (mostly binar…
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#### BuddySuite: Command-line toolkits for manipulating sequences, alignments, and phylogenetic trees
**Authors:** _Stephen Bond_, Karl Keat, Sofia Barreira, and Andy Baxevanis
**Source code:** [G…
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Dear IQ-Tree team,
In a [recent paper](https://www.biorxiv.org/content/10.1101/2024.03.29.587376v1.abstract) you have shown that re-estimating the substitution matrix under a profile mixture model …
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Anton Savchenko [@notgaudi](https://twitter.com/notgaudi) https://twitter.com/notgaudi/status/1286050044311932932
> Got it. Fungal ITS gave me a variety of hits from mammals to molluscs, so I underst…
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I realize that this is "clj-bio**sequence**", but a slightly more general scope which included some phylogenetics functionality would be awesome. I've started working on some newick parsing and such m…
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Hi,
In `iqtree`, it is possible to perform multiple tests of branch support, each one being assigned to the same branch delimited by `/`. As far as I can tell, biophylo cannot parse these trees.…
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`phylo2owl.py` currently writes out all the nodes found in the input tree file so it _should_ work with phylogenetic networks that aren't trees if DendroPy can parse them. If this is a necessary featu…
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This project is essentially an online phylogeny gallery offering view, edit and share functions:
http://www.evolgenius.info/evolview
How could we collaborate with them to bring value to our projec…
arlin updated
8 years ago