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Getting the following error predicting a sequence on a slightly longer protein sequence. Based on the error, I'm guessing we have a bug somewhere in the batching for proteins >500 AA (which have to be…
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https://github.com/Viktoria27010/Exam/blob/136241b2a60100c396b42a9109527e033aa26694/dz6/task1#L4-L15
Стоп-кодоны не требовалось убирать но ладно
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https://github.com/artinedenmb/marusya_lebedeva/blob/c12682e07d87e53b0ff069fd251c430129c28a67/last_homework_with_oop/seq2protein.py#L3-L13
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https://github.com/Daria-Brattseva/PhystechPython/blob/0bc7b6d653c43132579a543ec1874b0a6b1158b3/Task6.py#L4-L11
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### Is your feature request related to a problem? Please describe
`gffread` has many different functions, the one used in this module converts a gff file to gtf .
However `gffread` also converts a…
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Pdb uses PROMOTIF, we shoud use the same.
see https://www.rcsb.org/sequence/4ro1
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Hi.
I did the protein-protein interactions (PPIs) analysis and I have the csv file now after I melted the results. Now, I am wondering how can I filter the PPIs based on their location, limited to …
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Hi,
Thanks a lot for developing this great tool.
I am trying to run interaction analysis on two proteins.
bash predict_single.sh A.fasta B.fasta gives pdockQ score of 0.5
bash predict_si…
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Hi,
I am just curious is it possible to get the embedding of proteins and relations in https://www.zjukg.org/project/ProteinKG25/ separately using huggingface ontoprotein model ( https://huggingfa…
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https://github.com/MariaSukhorukova304/-/blob/3e537920a7f012f3adfec56b94f25e3aa894425f/OOP/Sequence_newest/seq2protein.py#L4-L11
Такая ссылка не будет работать, но ладно
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