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Hi,
I'm learning how to use MuSiC2. When I'm running the sample code in tutorial, an error happened to me. So, how to deal it.
///
> # music2 deconvolution
> set.seed(1234)
> est.prop = MuSiC2:…
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Hi! I am trying to align my RNA-Seq reads to the human genome using STAR. I'm using the following syntax:
#PBS -l nodes=3:ppn=4,vmem=80gb,walltime=03:00:00
STAR --runThreadN 12 --runMode genomeGe…
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# 时间表
![me3zrPbjjDtZMXWnPxFhCDa6CRrzEjyM](https://user-images.githubusercontent.com/5974903/96068513-d1bfec80-0ece-11eb-8dd1-2827d3e54df2.jpg)
# 演讲者
![people](https://user-images.githubuserconten…
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I use LIGER pretty regularly for integrating in vitro datasets with brain atlas data but came across this error I've not previously seen before. Any thoughts would be greatly appreciated! I don't have…
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Hi!
I have two questions about the sc reference:
1. Is it ok to us data from different species, i.e. mouse sc data to deconvolute human bulk?
2. Is it ok to mix sc data from different labs/pub…
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## Introduction
I would argue that after 5+ years of analysing droplet-based sc/snRNA-seq data, we know the top-N technical RNA detection effects:
1. Per-batch (10x reaction/inlet) detection rat…
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Hi,
Thank you for the nice work! I am trying to reproduce the STARmap simulation results of Figure 4, but the RCTD results I obtained are slightly different from what you shared in the folder Figur…
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should be the metrics in `summary.csv`
- **10xATAC** `outputs/10xATAC/MM_125/outs/summary.csv`
- **10xRNA**: wait for a example
think about ways to
- store these metrics: can create a table …
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Hi
Dear Aleksandr
Thanks for the useful software. May I ask how to solve the " Error in Z[cell_markers_genes_score[jj, "gene_"], ] :
subscript out of bounds." After running the commands to …
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Hi,
Thanks for the great cellrouter. :)
I'm testing mouse bone marrow sc RNA-seq example code from this [https://github.com/edroaldo/cellrouter/blob/master/stemid/StemID_BM_CellRouter.md](url). E…