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Hi,
I'm encountering an error while trying to run dbCAN, and it appears to be related to the output generation. Any assistance you could provide would be greatly appreciated.
I've installed dbca…
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Hi,
I exported axt format files through lastz(human as ref) genome comparison and obtained many pairwise alignments files(Each file is a human reference, e.g Homo_sapiens-Lemur_catta and omo_sapien…
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hello, run_dbcan supported team
when I run `run_dbcan data/bin2321.fasta prok -c cluster --out_dir cay/bin2321 --db_dir ~/database/cayzmes`, there was error about JSON, what should I do?
The dbcan v…
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Hi,
I'm having an issue where sometimes the aligned DNA sequences are empty.
### Background
I'm using STAR version 2.7.10b running in the Windows Subsystem for Linux using Ubuntu 22.04.1 LTS, …
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Hi @mnshgl0110 and everyone :)
I'm sorry if this is a really obvious question, I'm new to programming and haven't used Syri before.
I am getting this error code when I try to run Syri:
"Runnin…
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I have been [told by Ensembl](https://github.com/Ensembl/ensembl-vep/issues/1053#issuecomment-924650545) that:
> Ensembl transcripts completely match the reference genome they are annotated against…
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Hi Glenn!
I'm currently running `cactus-hal2maf` on a new alignment I've generated using Cactus v2.8.2. I'm running Cactus as a singularity image on a computing cluster. Anyways, I have an alignmen…
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I'm interested in developing consensus COI reference sequences for major groups in BOLD:
[BOLD](https://www.boldsystems.org/index.php/TaxBrowser_Home)
I'm guessing I can parse the database infor…
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Hi, I tried rsem-calculate-expression using bowtie, and the mapping step appeared to be completed. Then I got the error message
"The SAM/BAM file declares less than one reference sequence!"
sin…
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#### System info
```python
import sys; print(sys.version)
import platform; print(platform.python_implementation()); print(platform.platform())
import Bio; print(Bio.__version__)
```
```
3.8.19…