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First of all, thank you for your quick response to the last issue.
As you answered, I changed to and installed cellranger version 3.0.2 and confirmed that universc was running well with 10x data.
An…
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# Genomics web - Pipeline de Genómica en R
[https://franciscoascue.github.io/Rgenomics/modulo8.1.html](https://franciscoascue.github.io/Rgenomics/modulo8.1.html)
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Hello,
I am trying to run fusioncatcher 1.33 on the samples:
SRR5484560 -> https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5484560
SRR5484561 -> https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR…
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Hi there, I'm getting these errors when working on non-GISAID fasta
At first, in conda env, i executed:
`samtools faidx data/bayes/covid19-refseq.fasta #the dir i cp the reference to create the f…
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Running the code (also using vmiheer latest version) on a paired end dataset leads to a crash. gdb seems to indicate the "opposite alignment kernel" might be where things go wrong...
```
info : […
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I am currently running sratoolkit 3.1.1 and have run into the following error:
`~/anaconda3/envs/new_env/bin/fastq-dump ./PRJNA870935/raw_data/SRR21148806 -O ./PRJNA870935 --split-3 `
```
2024-…
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I am currently running sratoolkit 3.1.1 and have run into the following error:
**fasterq-dump:**
`fasterq-dump --split-files path/SRR22287940 -e 6 --outdir test`
2024-07-13T01:17:07 fasterq-d…
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I prefer using interleaved paired-end FASTQ, for example as output by `seqtk mergepe`. Does or could Flowcraft support this format?
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Hello!
I try to install files and get this error, but installation is continued and stop again without error. Can you explain this problem, please?
SRR8639142
lookup :|---- 7.01%2022-02-15T12:13…
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Recently, I used piPipes step by step using data in manual, I ran the small RNA-Seq part:
piPipes small -i Zamore.SRA.ago3_het.ox.ovary.trimmed.fastq.gz -g dm3 -o Zamore.SRA.ago3_het.ox.ovary.piPipes…