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Hi, I was trying to use vcfCooker but it seems that gotocloud need to be installed. I tried but getting the following error: It seems I have gotocloud executable but test failed and no vcfCooker execu…
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Hello, I was excited about the prospect of much faster imputation with mimimac4, but it seems to be taking twice as long to finish imputation of the same chromosome. They are running with the same num…
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While running the following command:
```
apex cis \
--vcf /mnt/mfs/ctcn/datasets/rosmap/wgs/ampad/variants/snvCombined/DEJ_11898_B01_GRM_WGS_2017-05-15_1.recalibrated_variants.annotated.vcf.gz \
-…
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Hi,
When I run $ cget install -f ./requirements.txt, I saw error :
Downloading https://github.com/statgen/savvy/archive/019a1ddaa9ec588f807f234f68787862f94ea057.tar.gz
[##########################…
maojn updated
4 years ago
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If you type in a complete gene name and press enter quickly, the system will often default to an (incorrect) auto-complete of a fraction of the gene name.
For instance, I just typed in MS4A2 and pres…
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I'm using MToolBox v1.2, and when I tested on the /test/sim_data that came with the download the software, I got the following error. I saw this error has come up in earlier posts but don't find a sol…
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## `indel`
`HWE_LPVAL` and `HWE_LLR` often differ by up to 1% in:
```
test/indel/expected/indel/final/all.genotypes.vcf.gz
test/indel/expected/indel/final/merge/all.genotypes.20.bcf
```
## `be…
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Hi, there:
I noticed **pheweb phenolist** **_glob-files_** on this instruction page https://github.com/statgen/pheweb/blob/master/etc/detailed-loading-instructions.md#configuration-options. Howe…
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From the step of `rnaseqc_call`, 8 bam files returned with an error message indicating `BAM file shares no contigs with GTF`
and this error message is preventing moving forward to the next step for…
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Hi, about a year ago @hyunminkang mentioned that there would have been an upgrade on the genotyping strategy.
It seems nothing has happened (?)
Has anyone tried genotyping on 10x data to deconvo…