-
View details in Rollbar: [https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/5326](https://app.rollbar.com/a/jimmy.andrews/fix/item/VariantGrid/5326)
```
Traceback (most recent call last):
…
-
```
cohort = load_phenopacket_folder(pp_directory=phenopacket_input_folder, cohort_creator=cohort_creator)
````
leads to errors for each patient with a structural variant, e.g.,
```
Patient PMID…
-
For interchanging structural variants.
-
Hello.
I was wondering if there is any documentation on the role each parameter plays within the overall code. I am trying to use GATK-SV to identify de novo structural variants and thus want to be m…
-
Hi,
When I run the tool wham using the command
toolPath -e $EXCLUDE -f $reference -t $alignments | perl ${utilsPath}/filtWhamG.pl
The tool runs without any error with a non-zero runtime. Howeve…
-
Hi,
I am using bcftools 1.15.1. I want to add INFO for a vcf file of structural variations.
The vcf is like:
```
chr1 10627 ID1 N . PASS some_INFO
chr1 90238 ID2 N . PASS some_INFO
chr1 9033…
-
GDC: https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/DNA_Seq_Variant_Calling_Pipeline/
- features we'd like to support: snv, indel, structural variants, extra chromosomal dna
- create ta…
-
For long read data, Pacific Biosciences developed a great visualization technique named BridgeMapper (http://files.pacb.com/software/smrtanalysis/2.3.0/doc/smrtview/help/Webhelp/App_View_Epipro.htm). …
-
Please check that the term does not already exist by using the ontology search tool OLS:
https://www.ebi.ac.uk/ols4/ontologies/cl
**Preferred term label**
subepithelial fibroblast (S2)
**Syno…
-
log:
```
2018-02-14 09:30:18,372 ERROR Command 'quantify /tmp/hap.py.result.jryogM.vcf.gz -o /mnt/yard2/ian/structural_variants/CHM1_CHM13_analysis/HG2.happy.roc.tsv -r /mnt/opt/refdata_new/hg1…