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https://github.com/CatalogueOfLife/data/issues/560
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Just discovered that records in Arctos identified as subclass Acari, a legacy name for ticks and mites accepted by WoRMS and TPT via Arctos sources, are being converted by GBIF to a butterfly genus an…
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is it possible to create multiple types of output in one run, eg. blast tabular + Taxonomic classification (102)?
Btw. 102 is not yet included in `diamond help`.
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type 1 errors technically aren't errors “ it's actually a limitation of using BIE that users should be clear about. IE “ BIE will always return the exact answer to the query name it is given. Therefor…
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* Classification, bounding box, segmentation. Do we allow a mix?
* Looking for all weeds vs looking for selected species
* Labelling by species vs labelling by other taxa vs non-taxonomic labels
* …
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Hey,
May I know what are the recommendations to properly credit various parties for data in MIxS standard? e.g.:
- personnel involved in sampling
- software/tools/reference databases used in taxo…
ymgan updated
6 months ago
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Dear all
I have been trying to compare the use of MetaPhlan2 and other classification tools (e.g. kraken2 and others). Will feeding a taxonomic and functional output fils generated by kraken2 and H…
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**Tests I was going to run but ran out of time for**
- Ensuring that all projections for spatial data inputs work
- Ensuring that the Major Taxonomic Group can change from plant to animal after answ…
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`Confidence score`: the proportion of k-mers mapping to a taxon, the default value is 0. A taxonomic classification is only taken if it is above this pre-defined threshold. Therefore confidence thresh…
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Although OTU is not a taxonomic level, it would be really nice to retain the OTU-level classifications through processing, and it makes sense to carry it parallel with the taxa tables.
Some other sta…