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Hi,
Not sure how to report this but I've observed a pattern of using annotate function, in that the resulting annotation is affected by the number of threads used. The more threads are used seems t…
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- Describe the issue or question:
java.lang.OutOfMemoryError: Java heap space
java.lang.OutOfMemoryError: Java heap space
Failed in checking D:\FragpipeTest_HCT116\23092021_Fusion_Gautam_NT1.raw. W…
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Hello,
First of all, thank you so much for this set of tools your lab shares. Really valuable.
I'm a "seasoned" molecular biologist, now giving my first few steps on bioinformatics. I've been re…
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Hello, I'm trying to convert a GFF file to GTF format and ended up having some problems.
The file i am trying to convert is the Araport11 annotation file from this link:
https://www.arabidopsis.org/…
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Hello
I installed the latest version of miRge3.0
```
miRge3.0 --version
3.0
```
into a conda environment. However, when I look at the help/documentation I see different output than on the docu…
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https://mp.weixin.qq.com/s/JYoa5GLRvqwiePeK0L1XkQ
ixxmu updated
2 years ago
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Dear all,
I am trying to use Mitoz to recover the mitogenome from Genomic Short reads. I am trying to use the function all with the Illumina SR1 and SR2, and the optional arguments related to the …
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Hello, sorry for another question but was wondering which file I should use to analyze tRF expression.
I have the tRF.Counts file but it looks like this below:
Entry name N1
Asn_Com…
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Hello,
**Describe the bug**
I am using the lastest version of Funannotate and I am having problems with funannotate update. I think the problem is related with the function gff2pasa and my annot…
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[Splicing mechanism](https://www.youtube.com/watch?v=vMMt0jA8dcM)
Intron
- starting point: 5' (5 prime) splice site: splice donor, GT***
- ending point: 3' (3 prime) splice site: splice acceptor, *…