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The diagnosis table includes information about grade, e.g. G3.
In the GA4GH Phenopacket Schema, there is a field "tumor_grade". Usually, grade refers to the histological appearance of tumor cells a…
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Hi there, when trying to run SpaCET with these data (https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast), I am getting an error at the SpaCET.deconvolution.matched.scRNAs…
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Dear Professors@wtwt5237:
Recently,I have been learning this pipeline,and hope to transplant it in our own data.However,I have some questions about the input data in the somatic.pl.Why you set …
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Allow tumor cells to be included in extracellular network module if results are available
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Peter Robinson said:
2) Disorder
We spoke about this in San Francisco and agreed to disagree for the moment.
I think that "A causally relatively isolated combination of physical
components" is go…
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Hi Dvir,
I'm trying to annotate cells from a dataset of lung tumor cells and healthy tumor cells that I merged together. I can't figure out where I am making a mistake. I have pre-processed, normali…
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Katy provides her meeting notes from a meeting with Ajay
# US#1 CTann
Trusted repository, # tissue samples.
Which of these rows are more accurate
Make conservative predictions
How far is real…
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Thanks for sharing this wonderful plugin with us.
Adding items from this plugin does not fetch the correct metadata for articles or perhaps uses some stock defaults. for example, The paper with the…
she3o updated
6 months ago
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```
Peter Robinson said:
2) Disorder
We spoke about this in San Francisco and agreed to disagree for the moment.
I think that "A causally relatively isolated combination of physical
components" is go…
-
A new study in the Image Data Resource looking at Cytotoxic T lymphocytes (CTL) in tumors has the following phenotypes that we might want to add new CMPO terms for.
1. increased CTL confinement…