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Apologies this is a long post about this Nature article, I have been reading the paper since it come out and I have MANY questions, too many to list in a single post. For some context I have been clos…
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I have prepared the infercnv object with no error but when i try to plot it the following error eruots out "Error in seq_len(max(obs_annotations_groups)): argument must be coercible to non-negative in…
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Hello GATK team!
## Bug Report
### Affected tool(s) or class(es)
mutect2
### Affected version(s)
- Latest public release version: 4.2.6.1
### Description
getting fail for all scatt…
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Analisando com a equipe de marcação e com a equipe de desenvolvimento concluirmos que a tag ``, pode conter conteúdos variados, ex.:
- `1`
- `1 (suppl)`
- `1 (suppl.)`
- `1 suppl`
Reparem que esse…
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* brainstorm use cases
* try to stand up part or all of golden demo
* hack brining together data from different sources
* hack together systems/stacks using these APIs (WES, DRS, etc)
* work on ot…
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Can you please share the code for processing reference data to obtain sc_references/sc_breast.csv, sc_breast_markers_pos.csv, and sc_breast_markers_neg.csv?
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Hello,
Thank you for this fantastic tool.
I ran the program, which resulted in what looks like a complete output directory. However, when I then run add_to_seurat, I get the following error.
…
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Thanks for the great tool - very useful! Do you think there would be any chance of a summary HTML across a cohort of samples that have been through PCGR?
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Hi,
I am trying to use infercnvpy on my single-cell dataset, but when I run:
cnv.tl.infercnv(
adata,
reference_key="leiden_1.0",
reference_cat='12',
)
I get the error message: …
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One of the goals of renku workflows is to allow a user to develop a robust, working pipeline by iterating quickly on a dataset locally (laptop, interactive session) and then send that workflow to a mo…