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`MBG bioconda 1.0.16`
Hi,
- I am testing MBG on an organellar genome and noticed the results can change if you run the program multiple times. I couldn't find a seed parameter in the options to …
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Hello! First of all thanks for the tool :)
I have been trying to run:
`Ratatosk correct -v -c 60 -s fq_short.txt -l long_list.txt -o ratatosk1`
in a CPU with up to 3Tb available RAM. It has…
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Hello!
kallisto 0.51.0 uses only one thread instead of 14 assigned for it. Is it OK or not? CPU is Intel(R) Xeon(R) CPU E5-2697 v3 @ 2.60GHz, RAM 256 Gb. Fasta file is approximately 6.5 Gb size.
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Would it be possible to add a "
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* OS: OS X
* Version: `mccortex=v0.0.3-610-g400c0e3 zlib=1.2.11 htslib=1.8-17-g699ed53 ASSERTS=ON hash=Lookup3 CHECKS=ON k=3..31`
Preparation:
```
$ wget http://ftp.ebi.ac.uk/pub/software/bigsi/…
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Hi:
I ran the command : $ agb.py -i assembly/canu -a canu then got the following error:
Traceback (most recent call last):
File "/home/zhangjun/miniconda3/envs/AGB/bin/agb.py", line 154, in
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I was trying to use the software but facing some issues. Error message I got is given below. Can you please help me with this?.
[M::worker_pipeline::2896.250*2.92] mapped 2720 sequences
[M::wor…
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The below is a unitig graph: the unitigs A and B is allelic (confirmed by aligning to reference). After HiC phasing, unitig A is in hic.hap2.p_ctg, but unitig B is missing in hic.hap1.p_ctg.
![360截图1…
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Hello,
Thank you very much for abPOA, it is a nice tool, installation was fast and easy.
I would like to be able to incrementally update the POA graph. That would be very practical to use the …
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Hi Ryan,
We're benchmarking MinION-only bacterial assemblies and I've started using Unicycler in place of my minimap2+miniasm+racon scripts, primarily because of its ability to circularize the unit…