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Hello,
I get the following error when running infer.clonal.models(). Can you please help me fix this?
Finding consensus models across samples...
Found 1 consensus model(s)
Generating consensu…
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I get the following output when running the plot.clonal.models pipeline:
> Sample 1: Xvaf Sample 2: dup Using monoclonal model
> Note: all VAFs were divided by 100 to convert from percentage to p…
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Hello, thanks very much for your previous answers. And I have another small question recently. Why gridss can not generate the genotypes of SVs (i.e., 0/1,1/1), and some other SV callers can give the …
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Similar to #11 I'd like to make my decoil ecDNA calls more conservative. But most of my samples have ~25-30x and I don't want to downsample them and loose information unnecessarily.
With default…
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I don't know why I have this error, whereas there is no activity of my cyclic application (110 ms) when that occurs
In the trace, "+++++++++" means the end of its cyclic processing is at this time…
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I was writing a wdl with this line in the task definition
`Float vaf = .01`
and was getting this error when validating
`Error: Invalid WDL: ERROR: Unexpected symbol (line 28, col 16) when pa…
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EX: `http://demo.vehiclefits.com/vaf/product/list/?category=%3F&make=351&model=10468&year=34567` should be `http://demo.vehiclefits.com/vaf/product/list/?category=%3F&make=Acura&model=CSX&year=2008`
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Dear authors,
I want to run Vardict with very low VAF filters or no VAF filter at all. Is that possible?
I tried to supply 0.00000001 it broke.
Is it because this threshold is too low for Vardict…
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Hi,
I am trying to run neusomatic in ensemble mode, but got stuck after the SomaticSeq.Wrapper.sh step and at the "preprocess.py --mode train" step.
I get the following error
Error: unable to ope…
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Dear Dang,
When I run the infer.clonal.models() for parents order, I meet a problem.
I reads the old issues about this question, but the method all not worked.
===============Error:=============…