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In MSK-IMPACT Cohort:
- [ ] Archer results are currently shown as a separate record on the [Patient view](https://cbioportal.mskcc.org/patient?studyId=mskimpact&caseId=P-0037751). Should we leverag…
inodb updated
8 months ago
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From Elissa: [In the Phenome Database], you can see some potential mapping, e.g. measurement 1501 has "altered susceptibility to bacterial infection" phenotype (MP) and "response to bacterial infectio…
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* Show locus counts even if you don’t have samples with a variant
* Make a second IGV link at the samples (for when you have no bams in any)
* Add IGV link to jump to sample bams (if they have it)
…
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Hi,
In your [Whole Blood Fine-Mapping paper](https://www.nature.com/articles/s41467-021-23134-8), it's mentioned that "5313 Basenji features corresponding to functional activity predictors" were us…
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Hi, I built mango on Amazon EMR (5.3.1) as follows:
```
git clone https://github.com/bigdatagenomics/mango.git
cd mango
sh ./scripts/move_to_spark_2.sh
sh ./scripts/move_to_scala_2.11.sh
mvn …
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**Describe the bug**
When adjusting the data source weights in the API, it is possible to set a weight over 1. This contradicts the documentation and the calibration purpose of the weight.
**Obser…
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I had done an analyse all and then sorted by relevance. I then changed the gene list and reran. The genes were now ordered alphabetically on the new list. But the drop down still says sorted by releva…
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Tentatively labeling this a bug, but it may be an inherent limitation.
This query
```
{
"message": {
"query_graph": {
"edges": {
"e01": {
…
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Currently, iobio uses a combination of RefSeq and GenCode. Mosaic uses Ensembl. We need to use HGNC.
- [ ] Determine the best set of genes (which must contain HGNC) to be sufficient. Is Ensembl + H…
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I tried to `parseVEP` a 800M tsv from all of mouse dbSNP, here:
`/hot/project/method/AlgorithmDevelopment/ALGO-000074-moPepGen/Giansanti_Mouse/processed_data/mpg_snp_indel/VEP/dbSNP150_GCF_000001635.…