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Hi funannotate team,
First, congratulations on the development of funannotate, is a great annotation tool for fungal genomes, I am having great fun using it!
I am trying to annotate some yeast g…
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Good morning! I hope this finds you well.
I am currently trying to use SoloTE version 1.08 to analyze transposable element expression in a dataset of 6 samples where I merged their bam files using…
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**What do you want to know?**
What is the recommended way to deploy the Conda package of RepeatMasker (v4.1.5) on an offline cluster?
**Helpful context**
Our cluster infrastructure is operated in…
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Dear Shujun,
We're using LTR_retriever to assess a wheat genome assembly on Magnus. Because the wheat genome is very large and we have a time limit, which is 24 hrs, so we can't finish the analysis…
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Decipher is not working, the link that points to the version ```DECIPHER_2.10.0``` is not available anymore, it has been replaced by 2.26. Unfortunately, the biostrings package is requires an update a…
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I ran RepeatModeler and got consensi.fa and families.stk files. There was an error in the installation which prevented the final classification step so I wanted to re-run RepeatClassifier on the outpu…
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Hello @yjx1217 ,
I'm currently using LRSDAY v1.72 and encountering the following problem during the mtDNA annotation phase.
Perhaps you've encountered this issue before.
```
1) Translate (fl…
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Hi, Shujun,
I am facing the same problem with dependency of RMblast engine when using EDTA. I tried to follow Nancy's suggestions https://github.com/oushujun/LTR_retriever/issues/43 .
I manuall…
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Thanks for developing the awesome software. I am running the following command with `-species all` option but encountered an error message. Could you please have a look?
`nohup RepeatMasker -pa 48…
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Reposted from mhammell-laboratory/TElocal#33
> Hi, TEtranscripts can quantify TE expression in the family levels using case and control groups. However, my samples were divided into several embryon…