-
Hi,
I am kind of confuse about the input I should provide (option -a).
Your github mentions contigs but your paper mentions unitigs.
I got both from CANU, which one are you recommending ?
-
-
In #34, I reported that in not-very-reproducible circumstances on my HPC, when I compiled bcalm from source, it produced bad cDBG files. I ended up [automating the heck out of the check and being unab…
-
Hi,
I'm running transabyss v 2.0.1 with default settings.
When checking the run-logs I was a little surprised to see the following message:
`warning: the seed-length should be at least twice k: …
-
Hello,
In my case, I'm trying to run mekada for short read, (300 to 600 bp), I have the version 0.6.0, I'll tried to download from github repository and It's the same version, so I used 0.6.0 and the…
cjw85 updated
5 years ago
-
It is probable that new versions of the tools are mislabelling unitigs. For example the profile:
/mnt/gpfs/Hackathon/SyntheticCommunity32/CoAssembly55I/assembly/high_res/group1/simplified.mult_prof…
-
I did a MinION run of some plant pathogen, followed it by canu correction script. I then ran minimap2 to map against the host to exclude the host reads. Now, I need to do an assembly using Miniasm and…
-
Hi,
Thanks for this tool.
I have been using the latest version to scaffold an assembly, however I have noticed that the statistics of the output assembly do not equal the statistics of the final…
-
hello,
when I run the software with generating the result. But it generates 3553 scaffold(too many) in the final result.
which parameter can I set to get a better result?
my command line likes t…
-
In two consecutive analyses I have encountered spaces versus underscores as separators for the respective fields in the generated fasta headers. I do not understand this unexpected behaviour...
Is th…