nanoporetech pomoxis issues

nanoporetech / pomoxis

Analysis components from Oxford Nanopore Research

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Issues with split_fastx command using pomoxis assem_assembly

#52 tweilin opened 5 months ago
0
Use csi not bai bam indices in mini_align

#51 colindaven opened 6 months ago
0
porechop installation fails

#50 jstraubhr closed 5 months ago
1
medaka requires pomoxis in order to run :: mini_align name conflict

#49 EricDeveaud closed 2 years ago
1
`split_fastx` on fastq files

#48 chAwater closed 2 years ago
2
long_fastx does not generate the other_*.fa file

#47 emiracherif closed 2 years ago
3
Assess_assembly documentation

#46 mpalmada closed 2 years ago
3
ZeroDivisionError: float division by zero

#45 shernadi closed 2 years ago
1
"intersect_assembly_errors" program runs too long a time without a finish

#44 yipukangda opened 3 years ago
0
[bug] Running catalogue_errors then get 'ValueError: MD tag not present'

#43 yipukangda closed 3 years ago
2
Cannot make pomoxis - 403 Forbidden

#42 CFmicro opened 4 years ago
0
Python 3.7?

#41 BrianaGross opened 4 years ago
4
mini_assemble core dump

#40 ccbruels opened 4 years ago
1
[mini_align] Override $SORT and parallel samtools index

#39 SamStudio8 closed 4 years ago
0
Closes #36 (Adds -l functionality to ignore long indels from assess_assembly)

#37 kishwarshafin closed 4 years ago
2
Requesting feature: give option to exclude long indels from assess assembly bam_stats.

#36 kishwarshafin closed 4 years ago
7
closes #32 and handles the case where there is no bed file but you wa…

#35 kishwarshafin closed 4 years ago
0
pomoxis installation

#34 xinghai999 closed 5 years ago
3
mini_assemble empty target sequences error

#33 kautto opened 5 years ago
3
pomoxis assess assembly `-T` parameter without `-b` gives an error.

#32 kishwarshafin closed 4 years ago
5
mini_assemble on short reads.

#31 cjw85 closed 4 years ago
2
Assess_assembly Documentation

#30 nhartwic opened 5 years ago
5
Running mini_assemble with large, high coverage fastq file

#29 avitalsteiman closed 5 years ago
5
Installing pomoxis on MacOS Mojave (10.14.2)

#28 Ekrates closed 5 years ago
2
Dev

#27 cjw85 closed 5 years ago
0
minimap2 doesn't work

#26 avitalsteiman closed 5 years ago
5
installation error - porechop

#25 mjfi2sb3 closed 5 years ago
9
Problem with running poxomis

#24 ookil opened 5 years ago
2
Tracing issues with racon after running mini_assemble

#23 beasty1711 opened 5 years ago
6
Installation error

#22 JesseBNL opened 5 years ago
1
Mini_assemble issue in line 188 specifying # threads

#21 ccbruels closed 5 years ago
1
Error downloading porechop?

#20 ScarabMonkey closed 4 years ago
7
Installing with Conda issues (unlisted dependencies). Git clone issue

#19 LarsDu closed 5 years ago
4
numpy 1.14.2 is installed but numpy<=1.13.3 is required by {'fast5-research'}

#18 MMicorescu closed 6 years ago
1
Install on mac OSX

#17 strnadja closed 6 years ago
3
Installation problems

#16 weedcentipede closed 6 years ago
1
decode instead of casting read_id bytes to "b'read_id'"

#15 txje closed 6 years ago
1
dependency on numpy 1.9.0 makes the build process take a long time..

#14 jamestwebber closed 6 years ago
1
mini_assemble command shows minimap error

#13 RajneeshSrivastava closed 6 years ago
1
missing dependencies

#12 jamestwebber closed 6 years ago
2
Basecalling raw signal with pyscrap.py

#11 svkazakov closed 6 years ago
3
Travisfix

#10 cjw85 closed 6 years ago
0
which python version needed?

#9 barak2 closed 6 years ago
0
where should i clone pomoxis?

#8 barak2 closed 6 years ago
1
Cannot open include file: 'dirent.h'

#7 barak2 closed 6 years ago
1
numpy

#6 mattloose closed 6 years ago
1
Add biopython to dependencies

#5 javierblasco closed 6 years ago
0
Update ReadMe

#4 mattloose closed 6 years ago
2
Bulk .fast5 datasets

#3 svkazakov closed 5 years ago
1
Skip docs on python 3.6 build

#2 cjw85 closed 6 years ago
0