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We classified metagenomic reads using a custom database.
This is the Kraken2 classification for an example paired read (from the .krak file)
taxid 2161 83|86 0:42 2161:5 0:2 |:| 0:1 2161:1 0:3 2…
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### Problem
Hi everyone, I would like to request natural sorting through Realm because my client needs the orders to be sorted ascending naturally by sequence. A sequence is a string that consists …
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In standard sql single quotes are for values and double quotes are for identities like column names. Although [sqlite does support double quote values](https://www.sqlite.org/quirks.html#double_quoted…
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Hi,
This is my first time using PIPITS. I had no issue with the tutorial on mock samples but during pipits_process for my actual samples, I run into this issue: Error: None zero returncode: classif…
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Hi,
We are migrating MySQL DB to PostgreSQL DB (both are hosted on Azure).
And we receive very strange error:
```
[root@vm-test home]# pgloader --debug commands.load
pgloader version 3.6.1
co…
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In your article, you mention:
'For testing on independent data, we removed from the IMG test dataset any sequence that had 90% identity along 90% of length coverage with any sequence in the training …
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Log file for running SLPred:
Descriptor type: GAAC
Descriptor type: CKSAAP
Descriptor type: CKSAAGP
Descriptor type: GDPC
Descriptor type: Moran
Descriptor type: Geary
Descriptor type: NMBroto
…
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# Overview
Currently some change types have "don't allow field X" for some databases. For example:
```
cacheSize="20"
incrementBy="50"
sequenc…
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Hi Mike,
Recently, I ran cenote-taker2 and blastn against nt database & diamond against nr database with the contigs assembled by Megahit. I found that about 10000 sequences were classified as viruse…
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command:
**$ vsearch --db UNITE10.fasta --sintax refs.fasta --tabbedout refs_sintaxonomy.tsv --sintax_cutoff 0.8 --sintax_random**
**vsearch v2.28.1_linux_x86_64, 251.2GB RAM, 96 cores**
produces…