-
```
$namespaces:
gx: "http://galaxyproject.org/cwl#"
hints:
- class: DockerRequirement
dockerPull: greatfireball/ime_transdecoder:5.0.2
- class: gx:interface
gx:inputs:
- …
ghost updated
5 years ago
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I wonder why I need a lot of RAM and >1 hour time with 8 cores just to convert some 800MB fasta file to ADAM format?
Crazy memory and CPU consumption of ADAM's FastaConverter makes ADAM unusable in …
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Hi,
I want to use TransDecoder for ORF finding in a single contig from de novo assembly. I noticed that even though a start codon is found, the sequence in the *transdecoder.pep generated by TransD…
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Command:
```
(py3.dammit) [ljcohen@r036 bridges]$ dammit annotate /pylon5/bi5fpmp/ljcohen/kfish_trinity/F_notti.trinity_out.Trinity.fasta --busco-group eukaryota \
> --user-databases /pylon5/b…
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sr320 updated
5 years ago
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## Bug report
Hi! After upgrading to nextflow 18.10.1 from 0.32.0, I started seeing this message repeatedly in nextflow output:
```
WARN: [LSF] queue status cannot be fetched > exit status: 255
…
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I have generated genome-based coding region annotation file with Transdecoder as described [here ](https://github.com/TransDecoder/TransDecoder/wiki#starting-from-a-genome-based-transcript-structure-g…
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I am running a funannotate train run with RNAseq, and somehow PASA failed as it tried to run TransDecoder.LongOrf from a folder whithin PASA (plugins/transdecoder). I have transdecoder installed throu…
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Upon execution of the Mikado Pick, I get some unexpected results.
In the resultant mikado.loci.gff file, I seem to be getting 'superloci' that overlap in genomic coordinates. Surely these should be…
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Brian,
I have assembled three wasps genomes and would like to update an on old de novo Trinity assembly by using the genome guided method. When using default settings, for some reason two of the G…