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Created a clean Project, study and link file , transform, load went fine, annotations failed. This was working fine before applying the stats fix changes.
2019-02-22 11:44:09 [main] INFO VariantH…
wbari updated
5 years ago
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Hi,
I ran into a bug at the last step. It seems it is caused by the loompy. But I followed the install structions to install every package and the loompy is installed from source (loompy==2.0.13).…
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I followed some previous recommendations to a similar problem, however it has not worked, it keeps stopping the process in the mapping.
[syslog.txt](https://github.com/user-attachments/files/16814989…
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Hi,
When i run `sopa read` with phonecycler data, i got an error: *AssertionError: Channel names must be strings, not object.*
Here is my code and log:
```python
(sopa) [sunsx@localhost 730]…
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Dear Daniel,
I was trying to run SMETANA on some models of the AGORA2 collection but I get error.
Can you suggest the parameters to run it.
Best,
Arianna
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Hi!
I'm bringing this issue over from [gitter](https://gitter.im/nf-tower/community?at=6179fc69a41fd206990c2040).
I haven't been able to execute docker-based workflows with Tower on the `Google …
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Hi,
I'm running microbeannotator v2.0.5 installed via conda:
`microbeannotator -i prot.fasta -o results -d /software/microbeannotator/database -m sword -t 50 --refine --full `
and get the fol…
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Name the workflow
HiFi-MAG-Pipeline
Describe the bug
After try to start the pipeline: "SyantaxError in line 48 of /mnt/mountdoom/mnt/work/bioinfo/home/pab23/miniconda3/envs/pb-metagenomics-tools/…
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Hi !
Thanks a lot for this really promising tools.
On my side, everything seems to run smoothly when using the data from "example1".
Nevertheless, when looking at the mutect2 summary files, …
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If the input data to annotate are from multiple expermients/conditions/etc does that affect the results
i.e. would you ideally annotate before combining, or no effect?
Also I had to `pip install r…