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Hi,
I ran Mash v1.0.1 on a sample PacBio data against the refseq.msh database:
```
mash dist -i refseq.msh BEI_staggered_2kb.fastq > BEI_staggered_2kb_dashI_1.1.mash
```
and got the following erro…
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Would be nice for phages, and let us "re-open" them when we discover that the left/right ends are not where the assembler opened them.
Discussed briefly with @nathandunn at GMOD2016 but wanted to doc…
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I think we should normalize the GC bias when doing metagenomics. We perform a metagenomics assembly and then we map the input reads against the assembly to quantify. But, of course, since prokaryotes …
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Hi,
I really like your code to find primers from the sequenced bacterial genomes. I am trying to debug the input file, dependencies, and command lines. Recently, I went to the eprimer3 step, I had th…
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Hi and thanks for developing this exciting pipeline.
I have a fasta file from a de novo sequenced genome containing ~55 000 contigs and using
bcbio_setup_genome.py -f corkwing.fasta -n corkwing -b v…
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I am using MSMC over genomes sequenced by Complete Genomics. Based on the Schiffels & Durbin 2014 paper, unphased sites would introduce bias for population split analysis. However, when I looked into …
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The BioCyc collection of Pathway/Genome Databases (PGDBs) provides an electronic reference source on the genomes and metabolic pathways of sequenced organisms. BioCyc PGDBs are generated by software t…
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Eller neste generasjons sekvenseringsmetoder? Tror jeg vil gå for termen uten "metoder" på.
Innspill?
Belegg: k16004705, ISBN: 9783874294928
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We are already comparing assemblies from sequencing data to the genomes of the sequenced species. However, we need to demonstrate that it's possible to get high scores with really good assemblies, and…
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Installed svviz strait out the gate, props for that! I'm excited to automate 100s of regions.
I'm having some trouble interpreting the plot. Here are some pieces of information that would really he…
zeeev updated
8 years ago