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Thank you for the great method!
Regarding this algorithm, I'd like to ask whether it is suitable for spatial transcriptomic dataset, such as 10x Genomics Spatial Transcriptomics. If applicable, do …
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When I try to run the codes below:
`cellChat
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ad.write(filename='ab.h5')
I used SCCAF but find this problem ,can you help me? thank you
OSError Traceback (most recent call last)
d:\program files\python37\lib…
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We assumed this might come up, and a user has now officially requested it.
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I'm using your code, but I found maybe you can add “class number check of y and y_test” while splitting the dataset. Because in my dataset there are many classes, in some folds, after split the y and…
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I've been using cellbender to clean a 10x single nuclei dataset to then perform downstream analysis on Seurat. The resulting filtered matrix h5 file from cellbender contains all the probes from the pr…
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I don't know how to solve this problem, please help me check my mistake.
I tried to lower the filtering criteria(min_shared_counts=10), but the prompt message remained the same.
But the most impor…
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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hello, author of this Fastintegration function. I haved heard of your DISCO work and found this suitable for my needs of a fast integration of my own data. However, even I followed your tutorial step …
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Recently I had a weird issue when running `snap.tl.macs3` on a cluster, my script would get stuck for a while and then throw an error related to parallelism issues:
```python
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