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#### Need
Currently, when the set of curated tissues or cell types is updated, the corresponding FE constants (e.g. [cell type cell class](https://github.com/chanzuckerberg/single-cell-data-portal/bl…
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Apparently Oscar crashed during a conference when more than 10 users were using the service at the same time. We should check the RAM usage test-wise in order to determine if we can host the datasets …
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## Describe the bug
I am running the tutorial provided for Geneformer with the CellxGene Census prebuilt model (census_version="2023-12-15"). I have gotten to the step to apply the model to the dat…
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When SOMA support for blockwise iterators are released:
- [x] deprecate cellxgene_census.experimental.util.X_sparse_iter
- [x] port all uses to blockwise iterators:
- [x] geneformer/mul
…
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Hi,
Great work! I really like the idea of building a universal cell embedding. I believe such embedding will greatly facilitate downstream analysis and provide valuable insights by integrating sing…
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There is potential an opportunity to implement a shuffling algorithm that closely _approximates_ a random sample shuffle. The following is a recapitulation of [slack discussion](https://czi-sci.slack.…
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Discovery ticket:
* https://app.zenhub.com/workspaces/single-cell-5e2a191dad828d52cc78b028/issues/gh/chanzuckerberg/single-cell/610
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Before scheduling this work, I propose waiting to stand-up th…
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I was attempting to `pip install -e` using the gihtub repo URL for tiledbsoma. This previously worked (as of December-ish).
The same thing happens on the `release-1.8` branch.
It works fine if …
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# Context
@jychien wrote:
Here is my current process for a revision:
- download h5ad using Download UX
- read h5ad and make changes to something (something like cell type update or dataset title)
- …
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# Depends on:
Implement must-haves of Generalized Ontology Querying API
# DOD:
- Get Curated Cell Classes by Term ID*
- Get Curated Cell Classes by Term ID List*
- Get Curated Cell Subclasses by Te…