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Hi everyone,
I ran the tutorial of horizontal integration. Here is my question, the tutorial used processed data I assume: adata = sc.read_h5ad('data/mouse_anterior_posterior_brain_merged.h5ad'). I…
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Dear Team,
I have successfully executed RunAzimuth with "human_cd34_bone_marrow.h5ad". But when I used my data, it is giving following error:
Running UMAP projection
17:10:40 Read 64830 rows
17:…
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Hi,
I am trying to run scdrs perform-downstream, but it keeps showing the error that cannot find the full score directory. Could you help me with this?
![image](https://github.com/user-attachme…
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There seems to be an off-by-one error in the var matrix of the AnnData object.
I run the following code:
`in_file = f"{data_path}/SrivatsanTrapnell2020_sciplex3.h5ad"`
`adata = sc.read_h5ad(in_fi…
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The financial and time cost of running schema migration can be reduced by minimally processing datasets that lack changes to the data. Further, the analytics pipeline should be made aware of which dat…
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Hi
I wanted to use your tool for correcting the bleeding effect, but whenever I ran the tool it would throw a memory error.
My count matrix is approximately 40000*3000 and I ran it on my HPC w…
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Hey,
thanks a lot for your package. It is very useful:).
I'm currently working with a multiome dataset for which I want to calculate gene scores for the ATAC data to compare them to the gene expre…
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作者您好,根据本仓库中的数据,我成功获取了经过整理的h5ad文件,感谢!其中有两个数据集(mouse olfactory bulb dataset | 10x Genomics Visium,mouse olfactory bulb dataset | Stereo-seq)我在其他地方没能找到相应的标签数据,您可以给出这两个数据集的标签数据的来源吗,谢谢
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Hi, thanks for your great work. I downloaded the related files and tried to reproduce the score analysis for Alzehaimer disease with provided score list. However, it seems that after unzipping the sco…
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Hi,
I‘m seeking for your kindly help. I tried to used SingleR in Stereopy to annotate the cell for saw8 output and my ref is BlueprintEncodeData.h5ad from SingleR. The code is as below, just like yo…