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Hi there,
I have a file of genera from some metagenomics sequencing, and I am attempting to use taxize to download higher-level taxonomy data for this file. I create a vector of names (Gnames
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Hello,
The following terms are *not* processes; they correspond to modes of interactions between organisms, but not to processes.
- 'symbiosis, encompassing mutualism through parasitism' -> 'sym…
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#### Bug Report Checklist
- [x] Have you provided a full/minimal spec to reproduce the issue?
- [x] Have you validated the input using an OpenAPI validator ([example](https://apidevtools.org/swagg…
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HI,
I see there is an option work-on-disk to use less RAM. But when I tried to use this option, the software tell me this message:
```
srun --mem=300G --cpus-per-task=10 krakenuniq-build --db…
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After adding ~3000 files or so, `k2 add-to-library` fails with this error
```
+ k2 add-to-library --db k2mdb --file /avilpage.com/anand/GCF_001347155.1_7054_6_6_genomic.fna
Calculating MD5 sum for …
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Hello, I have a data set consisting of 64 Kraken2 .report files and 1 sample_data.csv file. Each file can be uploaded successfully in its individual form, but when I try to upload all files at the sam…
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Looking at the Bracken source code, I see that counts do get down to the level of individual genomes. But this level of count data is not reported to the user.
Seems like it wouldn't be that much a…
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Codegen for openapi v950.
## Changelog
* Add support for `account_management` and `notification_banner` on `AccountSession.components` and `AccountSessionCreateParams.components`
* Add support for `e…
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search at https://www.ncbi.nlm.nih.gov/sra/ for "METAGENOMIC"[Source] NOT amplicon[All Fields]
direct link courtesy of luiz:
https://www.ncbi.nlm.nih.gov/sra/?term=%22METAGENOMIC%22%5BSource%5D…
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I'm facing an issue while using Diamond (version X.X.X) to create a database using the "refseq_AA_13_4_23.fasta" file and the taxonomy mapping file "prot.accession2taxid.FULL". The database creation p…