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I run the following command
`cytokit processor run_all --data-dir /lab/slices/ --config-path experiment.yaml --output-dir /lab/output/`
And get these error messages.
Error message
```
2…
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Could you send me the Dataset of "Segmentation of Nuclei in Images" ? My email site is 18842647783@163.com, thank you very much!
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The paper says you applied "a simple nuclei segmentation
pipeline" to your images. Could the code for that be shared here?
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Greetings,
We managed to run the notebook _Interior-Edge Segmentation 2D Fully Convolutional_ and trained a DeepCell model by using the dataset _https://deepcell-data.s3.amazonaws.com/nuclei/HeLa_S…
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For example, after using Segmentation.Watershed to segment a cell, is there some function that takes the resulting np.ndarray as an input and returns another np.ndarray with the outlines of all segmen…
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It might be useful at some point to allow for HDF5 output in the PhotonOutput1D module.
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Three HI generators has an issue with edm::event access in embedding mode. It trying to read empty edm::event using BaseHadroniser::getEDMEvent function:
Pyquen:
https://github.com/cms-sw/cmssw/blob…
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Hi,
I am trying to fit a RetinaNet on microscopy data where there is background and nuclei.
Basically my dataset has just 1 class, nuclei, and the default class background.
I am trying to find…
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There's a problem with TANGO recently and I"m thinking that the update to mcib3d-core is the issue. TANGO does not seem to be able to access mcib3d.image3d.processing.BinaryMorpho.binaryDilate anymore…
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When you load a segmentation into the Browser, previously you could uncheck the box next to the name (see pic attached) in the main window, and the labeling would not be displayed. Now it still works …