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See https://github.com/Zymo-Research/figaro
This would be primarily for amplicons with a minor overlap; might work best as a simple helper script.
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Dear developers,
Thank you very much for this advanced tool. I have a number of questions on modelling of CNVs on Tapestri data (thousands of cells and 400 amplicons):
1. I am interested in both…
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I would like to use LACA for shorter amplicons (600 bp) from ONT sequencing.
Can you provide the following options in the laca init so that the config file can work with alternative sequence input…
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Hello,
I like dadasnake and I am using it for processing 16S rRNA amplicons. I have some data from ITS and saw there is support for ITSx. However, there is an newer alternative for ITSx that uses f…
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I am struggling to completely understand the differences of the outputs in AA and AC and how to translate this to presenting the results of the analysis:
If I have an individual sample which appears …
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Hi,
I tried to classify my amplicons sequences with q2-greengenes2 plugin. Unsuccessfully.
What file(s) on the ftp can be used for classification using q2-greengenes2 plugin as **--i-reference-t…
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Hello,
Firstly, thanks for an interesting paper to read this morning!
I usually work with Nanopore data in a metabarcoding context, and was wondering if you have any idea how effective S-conLSH…
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[mydata.zip](https://github.com/erasmus-center-for-biomics/Nimbus/files/2285517/mydata.zip)
I used Nimbus to analyze my data, with a bed file and pair end fastq data, using the hg38 reference.
I…
booew updated
6 years ago
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Hey Martin!
I ntoiced a weird occurrence when running covid-truth-eval on artic assemblies built from simulated read sets, whereby a true SNP in the VCF of the artic assembly is incorrectly being i…
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### Is your feature request related to a problem?
Right now the Quarto report flags samples as pass/warn/fail based on somewhat "crude" thresholds. But it does not tell the user which parameter has t…