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I found issue #521 but none of the tips there helped in my case.
I am trying to run bactopia on WSL + Ubuntu, fresh install. Installed MambaForge as per the installation instructions, then installed …
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modulation = evasion
evasion = avoidance
suppression OK
induction >> to be reviewed
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Hello,
I am running reference-guided genome assembly; however, I got a problem with that. It looks the problem is with the reference genome. Reference genome can be in fasta or gbk format; however, n…
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### Is your feature related to a problem?
Hello,
We are starting with the study of resistance genes, and we are using EPI2ME Desktop and we were very happy because it provided a lot of information v…
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I am trying to download sequence data from _E. coli_ samples within the state of Washington - it's about 1283 sequences, which I know is a lot. The problem that I am running into is that entrez_search…
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The MoA results from Lee (#15) are suggesting kinases as potential mammalian targets, and this may suggest reasons for the tox we're seeing. Some suggested targets are kinases (@danielgedder will summ…
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The 'https://github.com/ncbi/amr/wiki/Curated-organisms' states 'Cronobacter' in list but its usage in amr throws error- it works fine without mentioning its name in '-O' though!
amrfinder --annota…
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We are a team of scientists based in Mount Kenya University and Jomo Kenyatta University of Agriculture and Technology – Kenya. We are specialized in Phytochemistry for the preparation of extracts and…
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As per the title, AMRFinderPlus is a nice tool for antimicrobial resistance detection, so it would be a good addition to the template.
There's already a previous service where it was used, called …