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After installing the `quast` package, the recipe say to manually download the BUSCO databases, via `quast-download-busco`. This program fails with:
```
Downloading BUSCO database...
Downloading …
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Hello !
I am using Metaeuk through BUSCO on my genome in order to do some gene prediction.
I expect that the single-copy, full-length detected proteins should have in their vast majority a methy…
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We have received a user report of an error thrown by Metaeuk during a BUSCO run. The issue reported is here: https://gitlab.com/ezlab/busco/-/issues/554
The error is
> Could not create symlink …
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**Question or Expected behavior**
Hello, I use NextPolish with Illumina reads to polish my Pacbio ( by CANU ) assembly contigs, but I found the BUSCO and LAI decrease after the polish step. I have ma…
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Hello,
I just like to know whether it is possible to run busco analysis within quast with the mammalian database?
Thanks!
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Cercis/canadensis/genomes/ISC453364.gnm3.GWXB
- Cercis/canadensis/annotations/IS…
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Update the snakemake wrapper for BUSCO. It helps to resolve some of the difficulties of Busco. E.g. that one cannot freely choose the output folder. I hope it shows you also dome of the best practices…
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I know busco is run as part of dammit but it doesn't seem like busco completeness evaluation is available anywhere.
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### Description
## Hero Selection
`1 -` Busco partida
`2 -` Aceito partida
`3 -` Tela de seleção de heróis não carrega
`4 -` Tento escrever no CHAT
`5 -` O sistema diz: "ninguém pode te ouvir"
…
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Hello. It appears that FALCON-Phase produces contigs with much lower busco score than the input 4-polish/cns-output/polished_p_ctgs.fasta.
Here are the benchmarks:
4-polish/cns-output/polished_p_c…
melop updated
2 years ago