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Hello,
I successfully run the scripts on my genomes. It might be heplful if you add a linked to your Collection of Position Weight Matrices in the ReadMe file and a description of the cluster buste…
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Hi everybody, I have one question regarding the `Disclaimer` Section in the `pagedown::html_resume`:
* Is it possible to put the Disclaimer on the bottom of the last page?
I have two pages and I…
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Hi All,
I am trying to run the nextflow multiruns pyscenic pipeline on a remote server for the small dataset given here (https://vsn-pipelines-examples.readthedocs.io/en/latest/PBMC10k_multiruns.ht…
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Hey all!
I was running the ChIP-seq pipe with the broad mark setting for some 5hmC ChIP samples generated with RELACs. Both this and the DNA-mapping pipelines ran smoothly all the way to the histoneH…
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`remove_lcr` was deprecated in 2018: https://github.com/bcbio/bcbio-nextgen/commit/17d8bb0623888a55a0c1b7ba52f1dd0f9d4dc5b4 (see also: https://github.com/bcbio/bcbio-nextgen/issues/3267#issuecomment-6…
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1. R version 4.0.4 (2021-02-15) -- "Lost Library Book"
RStudio Version 1.4.1106
tidyverse Version 1.3.1
devtools Version 2.4.2
rrtools Version 0.1.5
2. A research compendium is a seri…
raecv updated
2 years ago
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Hi there,
We are dealing with CUT&RUN data for the first time, and you mentioned that it might be useful to add the functionality to Nfcore. I have run the ATAC-seq pipeline so far, and am running…
ktrns updated
2 years ago
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Hello,
I wanted to run my SCENIC analysis with additional CHIP-seq based track information from ENCODE for the fruit fly for example. I was wondering, can this be done on the CLI? if so, where do i…
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Hi @nskvir,
I am analyzing chip-seq data with your great software and I have two doubts:
- In your github tutorial, you selectively remove simple and low-complexity repeats from the analysis. Wh…
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This is a request for comments for the implementation of modules feature for Nextflow.
This feature allows the definition of NF processes in the main script or a separate library file, that can be …