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Inference queries like `is_ancestor_of` are really useful, but right now they are quite slow, requiring on the order of seconds per query. I believe this is because they are always resolved with a que…
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Hi,Dear software creator,
I encountered two types of errors while using createArrowFiles.But,I used the tutorial dataset, and everything worked fine.And than,
I have searched some similar issue di…
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Hello, I am trying to export to the BedGraph File.
However, I only receive tag cluster file not divided into two strands.
This is what I did
```
> trk humanS_cluster |> CTSSnormalizedTpmGR(…
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Dear TSS team,
I am testing the TSS using real world bacteria genomes. There are 8 of them and all are some what fragmented (e.g.,1-30 fragments). This is a great example to test whether TSS is rob…
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I've been running vRhyme on some of my test data [SRR11140750-test.zip](https://github.com/AnantharamanLab/vRhyme/files/13515750/SRR11140750-test.zip) and vRhyme doesn't generate any output bins (alon…
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### Description of feature
Continuing from https://github.com/scverse/genomic-features/pull/59#issuecomment-2034149437
In the mentioned PR, we found out that duckdb is inconsistent with what order…
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**long non-coding RNA**: I used definition from wikipedia: Long non-coding RNAs (long ncRNAs, lncRNA) are non-protein coding transcripts longer than 200 nucleotides.
Alternative term: lncRNA
Parent: …
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Add a tool to `help-lint` for finding orphaned articles.
``` factor
"unicode.breaks" help
```
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I'm trying to get the fhir server to work on a schema other than public, and I'm not having much luck. I've tried many different combinations of properties with my current set being:
```
spring:…
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Hi all,
I've been trying to run HINGE using Circular Consensus Sequencing reads that are obtained after a Sequel run. As expected the number of reads decreases drastically due to CCS, but on the ot…