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# Expected Behavior
I have provided the below command
**mmseqs expandaln ./base/qdb ./uniprot/uniprotdb.index ./base/res ./uniprot/uniprotdb.index ./base/res_exp --db-load-mode 2 --expansion-mode…
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Hi,
I wonder what configuration and object looked like for these objects? https://cells.ucsc.edu/?ds=multimodal-pbmc+sct
We have a gene expression + CITE-seq data for several objects, and we'd lik…
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Hey, first of all thank you so much for the incredibly useful and well documented CITE-seq-count tool. I was going through the documentation and also tried to figure out from the code what the differe…
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Hello,
We are exploring QC tools that require the full count matrix (including background) for the purpose of quantifying barcode levels from ambient drops. These expect the cell ranger unfiltered …
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Thank you for the wonderful package! I'm wondering if I may apply this package to classify cite-seq datasets using my own custom cell surface markers?
I've tried changing the assay type and querying…
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Project Title: Cell hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomicsProject UUID: f81efc03-9f56-4354-aabb-6ce819c3d414Wrangler/s: William,G,Sullivan…
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Many thanks to @edg1983 and @ewels for the cellranger module https://github.com/ewels/MultiQC/pull/1821. Cellranger count is most commonly ran with GEX data only, but can also support feature barcode …
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Hi @Hoohm,
I have been trying to align some ADT data and the process pool keeps crashing after maxing out the RAM available on the system. I am running on a system with 32 cores and 64GB or RAM and t…
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Hi I have been trying to follow to tutorial of Integration and reference mapping with multigrate https://docs.scarches.org/en/latest/multigrate.html. However, I was having trouble loading the multiVAE…
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Hi all,
I am really liking your package, it has made many operations infinitely easier. We tend to prefer the `tidySingleCellExperiment` to Seurat, however, the one thing we have noticed is that th…